TAF1C protein (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAF1C

Uncharacterized protein. (921 aa)

Predicted Functional Partners:

TAF1D

0.994

ENSVURP00010022010

0.966

TBPL2

0.965

TBP

0.965

RRN3

0.885

UBTF

0.831

POLR1A

0.797

POLR1E

0.783

CDK7

0.780

POLR1B

0.778

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK7	POLR1A	ENSVURP00010025405	ENSVURP00010012074	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.705
CDK7	POLR1B	ENSVURP00010025405	ENSVURP00010020940	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.919
CDK7	TAF1C	ENSVURP00010025405	ENSVURP00010027611	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.780
CDK7	TBP	ENSVURP00010025405	ENSVURP00010025568	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.976
CDK7	TBPL2	ENSVURP00010025405	ENSVURP00010022981	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	TATA-box binding protein like 2.	0.976
CDK7	UBTF	ENSVURP00010025405	ENSVURP00010010869	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.776
ENSVURP00010022010	POLR1A	ENSVURP00010022010	ENSVURP00010012074	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.836
ENSVURP00010022010	POLR1B	ENSVURP00010022010	ENSVURP00010020940	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.815
ENSVURP00010022010	POLR1E	ENSVURP00010022010	ENSVURP00010015157	Uncharacterized protein.	Uncharacterized protein.	0.853
ENSVURP00010022010	RRN3	ENSVURP00010022010	ENSVURP00010011619	Uncharacterized protein.	Uncharacterized protein.	0.881
ENSVURP00010022010	TAF1C	ENSVURP00010022010	ENSVURP00010027611	Uncharacterized protein.	Uncharacterized protein.	0.966
ENSVURP00010022010	TAF1D	ENSVURP00010022010	ENSVURP00010013313	Uncharacterized protein.	Uncharacterized protein.	0.991
ENSVURP00010022010	TBP	ENSVURP00010022010	ENSVURP00010025568	Uncharacterized protein.	Uncharacterized protein.	0.979
ENSVURP00010022010	TBPL2	ENSVURP00010022010	ENSVURP00010022981	Uncharacterized protein.	TATA-box binding protein like 2.	0.968
ENSVURP00010022010	UBTF	ENSVURP00010022010	ENSVURP00010010869	Uncharacterized protein.	Uncharacterized protein.	0.856
POLR1A	CDK7	ENSVURP00010012074	ENSVURP00010025405	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.705
POLR1A	ENSVURP00010022010	ENSVURP00010012074	ENSVURP00010022010	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.836
POLR1A	POLR1B	ENSVURP00010012074	ENSVURP00010020940	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1A	POLR1E	ENSVURP00010012074	ENSVURP00010015157	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
POLR1A	RRN3	ENSVURP00010012074	ENSVURP00010011619	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999