STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pemA_1Pectinesterase. (1435 aa)    
Predicted Functional Partners:
pehX_5
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 0.897
CUN24124.1
Pectate lyase.
 
  
 0.851
rhgT_3
Carbohydrate esterase family 12 protein.
  
 0.850
pehX_4
exo-poly-alpha-D-galacturonosidase; Belongs to the glycosyl hydrolase 28 family.
 
 0.823
pehX_3
Polygalacturonase (Pectinase); Belongs to the glycosyl hydrolase 28 family.
 
 0.822
pehX_1
Exo-poly-alpha-galacturonosidase; Belongs to the glycosyl hydrolase 28 family.
 
 0.819
CUM75979.1
Polysaccharide lyase 1.
 
  
 0.819
CUM87600.1
Pectate lyase.
 
  
 0.818
pehX_2
Polygalacturonase (Pectinase); Belongs to the glycosyl hydrolase 28 family.
 
 0.815
yesW_3
Polysaccharide lyase 11%2C rhamnogalacturonan lyase.
 
 0.811
Your Current Organism:
Bacteroides salyersiae
NCBI taxonomy Id: 291644
Other names: ATCC BAA-997, B. salyersiae, Bacteroides salyersae, Bacteroides salyersiae corrig. Song et al. 2005, Bacteroides sp. WAL 10018, CCUG 48945, DSM 18765, JCM 12988, WAL 10018
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