STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM79428.1Exonuclease V subunit alpha. (472 aa)    
Predicted Functional Partners:
CUN08237.1
ATP-dependent helicase; Belongs to the helicase family. UvrD subfamily.
 
 0.830
CUM79413.1
Uncharacterised protein.
 
     0.768
rsmD
Putative methyltransferase.
       0.701
CUM79398.1
Protein of uncharacterised function (DUF3822).
       0.701
recQ_4
RecQ familyATP-dependent DNA helicase.
  
 
 0.695
CUM98151.1
Exonuclease VIII.
  
 0.664
CUM79798.1
Domain of Uncharacterised Function (DUF349).
  
     0.560
dnaN
Putative DNA polymerase III beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiat [...]
  
 
 0.532
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
  
     0.518
CUN08225.1
RecB family exonuclease.
  
   
 0.512
Your Current Organism:
Bacteroides salyersiae
NCBI taxonomy Id: 291644
Other names: ATCC BAA-997, B. salyersiae, Bacteroides salyersae, Bacteroides salyersiae corrig. Song et al. 2005, Bacteroides sp. WAL 10018, CCUG 48945, DSM 18765, JCM 12988, WAL 10018
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