STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufEPutative SufE Fe/S-cluster-related protein. (142 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.942
sufC
Putative ABC transporter ATP-binding protein sufC.
 
 
 0.767
sufB
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.750
ywaD
Predicted aminopeptidases.
       0.660
sufD
Putative ABC transporter protein sufD.
 
 
 0.637
CUM85577.1
Carboxypeptidase.
       0.580
cdr
Putative pyridine nucleotide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
   
 
 0.566
buk2
Butyrate kinase; Belongs to the acetokinase family.
       0.524
pta
Putative phosphate acetyl/butyryltransferase.
       0.524
CUN24114.1
Uncharacterised protein.
    
 0.519
Your Current Organism:
Bacteroides salyersiae
NCBI taxonomy Id: 291644
Other names: ATCC BAA-997, B. salyersiae, Bacteroides salyersae, Bacteroides salyersiae corrig. Song et al. 2005, Bacteroides sp. WAL 10018, CCUG 48945, DSM 18765, JCM 12988, WAL 10018
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