STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguA_1Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family. (371 aa)    
Predicted Functional Partners:
CUN04202.1
Putative hydrolase.
 
 0.998
speA
Putative arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.899
aguA_2
Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family.
  
  
  0.827
CUN04169.1
Ferredoxin domain-containing protein.
       0.777
ramA_1
Predicted amidohydrolase.
 
 
 0.501
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.475
arg
Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
    
 0.464
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.401
nspC
Carboxynorspermidine decarboxylase.
    
 0.401
Your Current Organism:
Bacteroides salyersiae
NCBI taxonomy Id: 291644
Other names: ATCC BAA-997, B. salyersiae, Bacteroides salyersae, Bacteroides salyersiae corrig. Song et al. 2005, Bacteroides sp. WAL 10018, CCUG 48945, DSM 18765, JCM 12988, WAL 10018
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