STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN04807.1Radical SAM protein. (341 aa)    
Predicted Functional Partners:
moaA
Molybdenum cofactor biosynthesis protein A.
 
  
 0.945
glgA
Glycosyltransferase.
 
     0.905
wcaJ_1
Sugar transferases involved in lipopolysaccharide synthesis.
  
    0.793
rfbC
dTDP-4-dehydrorhamnose 3%2C5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
       0.780
CUN04766.1
Uncharacterised protein.
       0.779
rkpK
UDP-glucose 6-dehydrogenase.
       0.734
ribA
Putative GTP cyclohydrolase II/3%2C4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.682
CUN04717.1
Putative lipoprotein.
       0.625
CUN26669.1
Uncharacterised protein.
  
 
 0.618
yccM_2
4Fe-4S binding domain.
 
  
 0.576
Your Current Organism:
Bacteroides salyersiae
NCBI taxonomy Id: 291644
Other names: ATCC BAA-997, B. salyersiae, Bacteroides salyersae, Bacteroides salyersiae corrig. Song et al. 2005, Bacteroides sp. WAL 10018, CCUG 48945, DSM 18765, JCM 12988, WAL 10018
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