STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traC_1Conjugate transposon protein. (523 aa)    
Predicted Functional Partners:
traG-2
Conjugate transposon protein.
     0.993
CUN06178.1
Conjugate transposon protein.
 
     0.971
traG-3
Domain of uncharacterised function DUF87.
 
     0.965
CUM70533.1
Conjugation system ATPase%2C TraG family.
 
     0.939
CUN11787.1
Conjugate transposon protein.
 
     0.939
CUN14622.1
Conjugate transposon protein.
 
     0.893
CUN14543.1
Conjugate transposon protein.
 
   
 0.890
CUN14557.1
Conjugate transposon protein.
 
     0.875
CUN14648.1
Conjugate transposon protein.
 
   
 0.829
CUN06120.1
Putative exported transmembrane protein.
 
 
 0.822
Your Current Organism:
Bacteroides salyersiae
NCBI taxonomy Id: 291644
Other names: ATCC BAA-997, B. salyersiae, Bacteroides salyersae, Bacteroides salyersiae corrig. Song et al. 2005, Bacteroides sp. WAL 10018, CCUG 48945, DSM 18765, JCM 12988, WAL 10018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.