STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN27538.1Fe2+-dicitrate sensor%2C membrane component. (324 aa)    
Predicted Functional Partners:
CUN20284.1
RNA polymerase%2C sigma-24 subunit%2C ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.794
sigM_6
RNA polymerase%2C sigma-24 subunit%2C ECF subfamily.
  
  0.784
CUN13025.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.778
CUM73178.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.740
CUN24855.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.735
CUN26271.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.723
fecI_3
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.720
fecI_1
RNA polymerase sigma factor%2C sigma-70 family/RNA polymerase sigma-70 factor%2C Bacteroides expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.708
sigV_1
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.697
susG
Alpha-amylase.
       0.619
Your Current Organism:
Bacteroides salyersiae
NCBI taxonomy Id: 291644
Other names: ATCC BAA-997, B. salyersiae, Bacteroides salyersae, Bacteroides salyersiae corrig. Song et al. 2005, Bacteroides sp. WAL 10018, CCUG 48945, DSM 18765, JCM 12988, WAL 10018
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