DICVIV_14064 protein (Dictyocaulus viviparus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DICVIV_14064

Uncharacterized protein. (146 aa)

Predicted Functional Partners:

DICVIV_10445

0.928

DICVIV_06833

0.895

DICVIV_10944

0.710

DICVIV_01344

0.673

DICVIV_06892

0.601

DICVIV_09137

0.589

DICVIV_08576

0.587

DICVIV_04658

0.520

DICVIV_01644

0.520

DICVIV_11933

0.519

Your Current Organism:

Dictyocaulus viviparus

NCBI taxonomy Id: 29172
Other names: D. viviparus, Dictyocaulus sp. AMP-2014, bovine lungworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DICVIV_01344	DICVIV_04658	A0A0D8Y6K6	A0A0D8XX64	Uncharacterized protein.	Peptidase family C78.	0.969
DICVIV_01344	DICVIV_06833	A0A0D8Y6K6	A0A0D8XQW7	Uncharacterized protein.	Uncharacterized protein.	0.720
DICVIV_01344	DICVIV_10445	A0A0D8Y6K6	A0A0D8XIC8	Uncharacterized protein.	Uncharacterized protein.	0.512
DICVIV_01344	DICVIV_10944	A0A0D8Y6K6	A0A0D8XH29	Uncharacterized protein.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.927
DICVIV_01344	DICVIV_14064	A0A0D8Y6K6	A0A0D8X691	Uncharacterized protein.	Uncharacterized protein.	0.673
DICVIV_01644	DICVIV_10445	A0A0D8Y884	A0A0D8XIC8	GTP-binding domain protein.	Uncharacterized protein.	0.411
DICVIV_01644	DICVIV_11933	A0A0D8Y884	A0A0D8XEJ5	GTP-binding domain protein.	SRP54-type protein, GTPase domain protein.	0.998
DICVIV_01644	DICVIV_14064	A0A0D8Y884	A0A0D8X691	GTP-binding domain protein.	Uncharacterized protein.	0.520
DICVIV_04658	DICVIV_01344	A0A0D8XX64	A0A0D8Y6K6	Peptidase family C78.	Uncharacterized protein.	0.969
DICVIV_04658	DICVIV_06833	A0A0D8XX64	A0A0D8XQW7	Peptidase family C78.	Uncharacterized protein.	0.561
DICVIV_04658	DICVIV_10445	A0A0D8XX64	A0A0D8XIC8	Peptidase family C78.	Uncharacterized protein.	0.550
DICVIV_04658	DICVIV_10944	A0A0D8XX64	A0A0D8XH29	Peptidase family C78.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.709
DICVIV_04658	DICVIV_14064	A0A0D8XX64	A0A0D8X691	Peptidase family C78.	Uncharacterized protein.	0.520
DICVIV_06833	DICVIV_01344	A0A0D8XQW7	A0A0D8Y6K6	Uncharacterized protein.	Uncharacterized protein.	0.720
DICVIV_06833	DICVIV_04658	A0A0D8XQW7	A0A0D8XX64	Uncharacterized protein.	Peptidase family C78.	0.561
DICVIV_06833	DICVIV_10445	A0A0D8XQW7	A0A0D8XIC8	Uncharacterized protein.	Uncharacterized protein.	0.964
DICVIV_06833	DICVIV_10944	A0A0D8XQW7	A0A0D8XH29	Uncharacterized protein.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.764
DICVIV_06833	DICVIV_14064	A0A0D8XQW7	A0A0D8X691	Uncharacterized protein.	Uncharacterized protein.	0.895
DICVIV_06892	DICVIV_08576	A0A0D8XRA6	A0A0D8XL59	Ras family protein.	Ergosterol biosynthesis ERG4/ERG24 family protein.	0.653
DICVIV_06892	DICVIV_09137	A0A0D8XRA6	A0A0D8XJS1	Ras family protein.	Legume-like lectin family protein.	0.713