STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DICVIV_05958General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (135 aa)    
Predicted Functional Partners:
DICVIV_05972
Putative serine--tRNA ligase.
    
 0.992
DICVIV_03360
Transcription factor ssl1.
   
 0.992
DICVIV_05061
DNA repair helicase.
    
 0.985
DICVIV_01167
CDK-activating kinase assembly factor MAT1.
    
 0.983
DICVIV_09717
Cyclin ccl1.
    
 0.982
DICVIV_07638
Transcription factor TFIIB repeat-containing domain protein.
    
 0.979
DICVIV_06320
TFIIE alpha subunit.
   
 0.979
DICVIV_12092
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.970
DICVIV_00751
Uncharacterized protein.
   
 0.970
DICVIV_06553
Transcription factor IIA, alpha/beta subunit.
    
 0.967
Your Current Organism:
Dictyocaulus viviparus
NCBI taxonomy Id: 29172
Other names: D. viviparus, Dictyocaulus sp. AMP-2014, bovine lungworm
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