DICVIV_04882 protein (Dictyocaulus viviparus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DICVIV_04882

Eukaryotic translation initiation factor eIF2A. (597 aa)

Predicted Functional Partners:

DICVIV_03032

0.930

DICVIV_07970

0.671

DICVIV_10364

0.571

DICVIV_03712

0.566

DICVIV_09310

0.564

DICVIV_03287

0.553

DICVIV_03286

0.553

DICVIV_03996

0.532

DICVIV_08875

0.490

DICVIV_05720

0.482

Your Current Organism:

Dictyocaulus viviparus

NCBI taxonomy Id: 29172
Other names: D. viviparus, Dictyocaulus sp. AMP-2014, bovine lungworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DICVIV_03032	DICVIV_03996	A0A0D8Y3P1	A0A0D8XZJ1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Nuclear transport factor 2 domain protein.	0.698
DICVIV_03032	DICVIV_04882	A0A0D8Y3P1	A0A0D8XWG1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Eukaryotic translation initiation factor eIF2A.	0.930
DICVIV_03032	DICVIV_05720	A0A0D8Y3P1	A0A0D8XWM9	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Putative translation initiation factor aIF-2.	0.967
DICVIV_03032	DICVIV_07970	A0A0D8Y3P1	A0A0D8XQ96	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Putative histidine--tRNA ligase.	0.573
DICVIV_03032	DICVIV_08875	A0A0D8Y3P1	A0A0D8XKK7	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.990
DICVIV_03032	DICVIV_09310	A0A0D8Y3P1	A0A0D8XJA9	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Elongation factor Tu GTP binding domain protein.	0.996
DICVIV_03032	DICVIV_10364	A0A0D8Y3P1	A0A0D8XIN4	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	S1 RNA binding domain protein.	0.997
DICVIV_03286	DICVIV_03287	A0A0D8Y2W8	A0A0D8Y0X5	SH3_12 domain-containing protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle.	0.921
DICVIV_03286	DICVIV_04882	A0A0D8Y2W8	A0A0D8XWG1	SH3_12 domain-containing protein.	Eukaryotic translation initiation factor eIF2A.	0.553
DICVIV_03286	DICVIV_08875	A0A0D8Y2W8	A0A0D8XKK7	SH3_12 domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.533
DICVIV_03287	DICVIV_03286	A0A0D8Y0X5	A0A0D8Y2W8	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle.	SH3_12 domain-containing protein.	0.921
DICVIV_03287	DICVIV_04882	A0A0D8Y0X5	A0A0D8XWG1	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle.	Eukaryotic translation initiation factor eIF2A.	0.553
DICVIV_03287	DICVIV_08875	A0A0D8Y0X5	A0A0D8XKK7	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.533
DICVIV_03712	DICVIV_04882	A0A0D8Y274	A0A0D8XWG1	Uncharacterized protein.	Eukaryotic translation initiation factor eIF2A.	0.566
DICVIV_03996	DICVIV_03032	A0A0D8XZJ1	A0A0D8Y3P1	Nuclear transport factor 2 domain protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.698
DICVIV_03996	DICVIV_04882	A0A0D8XZJ1	A0A0D8XWG1	Nuclear transport factor 2 domain protein.	Eukaryotic translation initiation factor eIF2A.	0.532
DICVIV_03996	DICVIV_08875	A0A0D8XZJ1	A0A0D8XKK7	Nuclear transport factor 2 domain protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.535
DICVIV_03996	DICVIV_10364	A0A0D8XZJ1	A0A0D8XIN4	Nuclear transport factor 2 domain protein.	S1 RNA binding domain protein.	0.481
DICVIV_04882	DICVIV_03032	A0A0D8XWG1	A0A0D8Y3P1	Eukaryotic translation initiation factor eIF2A.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.930
DICVIV_04882	DICVIV_03286	A0A0D8XWG1	A0A0D8Y2W8	Eukaryotic translation initiation factor eIF2A.	SH3_12 domain-containing protein.	0.553