STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DICVIV_01538Dcp2, box A domain protein. (710 aa)    
Predicted Functional Partners:
DICVIV_04495
Dcp1-like decapping family protein.
    
 0.999
DICVIV_00545
YjeF N-terminal domain-containing protein.
  
 0.999
DICVIV_03031
Uncharacterized protein.
    
 0.998
DICVIV_07530
DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
   
 0.993
DICVIV_00787
Ge1_WD40 domain-containing protein.
    
 0.969
DICVIV_00788
Uncharacterized protein.
    
 0.969
DICVIV_06886
CAF1 family ribonuclease.
    
 
 0.962
DICVIV_00413
FFD and TFG box motif protein.
    
 
 0.961
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.960
DICVIV_03287
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle.
   
 0.954
Your Current Organism:
Dictyocaulus viviparus
NCBI taxonomy Id: 29172
Other names: D. viviparus, Dictyocaulus sp. AMP-2014, bovine lungworm
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