STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DICVIV_02743Zinc finger, C3HC4 type. (481 aa)    
Predicted Functional Partners:
DICVIV_06187
NOT2 / NOT3 / NOT5 family protein.
    
 
 0.629
DICVIV_10235
AAA_lid_3 domain-containing protein.
    
 
 0.556
DICVIV_10234
ATPase, AAA family; Belongs to the AAA ATPase family.
    
 
 0.556
DICVIV_01217
Cell division control protein 48; Belongs to the AAA ATPase family.
    
 
 0.556
DICVIV_13239
UAS domain-containing protein.
    
 
 0.551
DICVIV_03303
UBX domain protein.
    
 
 0.551
DICVIV_00123
UBX domain-containing protein.
    
 
 0.551
DICVIV_03719
VHL domain-containing protein.
   
 
  0.542
DICVIV_03894
Uncharacterized protein.
      
 0.533
DICVIV_00473
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.490
Your Current Organism:
Dictyocaulus viviparus
NCBI taxonomy Id: 29172
Other names: D. viviparus, Dictyocaulus sp. AMP-2014, bovine lungworm
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