STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DICVIV_00473E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (942 aa)    
Predicted Functional Partners:
DICVIV_06316
Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.959
DICVIV_00472
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
 
     0.925
DICVIV_03955
Uncharacterized protein.
    
 
 0.849
DICVIV_06100
Ubiquitin family protein.
   
 0.765
DICVIV_00888
Ubiquitin family protein.
   
 0.765
DICVIV_12302
Ribosomal protein S27a.
   
 0.750
DICVIV_08744
Ribosomal L40e family protein.
    
  0.723
DICVIV_07554
Zinc finger, C3HC4 type.
   
 0.686
DICVIV_01503
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.684
DICVIV_00500
Zinc finger, C3HC4 type.
    
 
 0.655
Your Current Organism:
Dictyocaulus viviparus
NCBI taxonomy Id: 29172
Other names: D. viviparus, Dictyocaulus sp. AMP-2014, bovine lungworm
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