Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

flgJ

flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ (329 aa)

Predicted Functional Partners:

flgH

0.999

flgI

0.999

WL94_22810

0.999

flgG

0.999

flgK

0.999

WI67_16110

0.999

fliM

0.999

fliF

0.999

fliG

0.999

DM42_1940

0.999

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_1940	WI67_16110	DM42_1940	DM42_1986	annotation not available	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	0.950
DM42_1940	WL94_22810	DM42_1940	DM42_1988	annotation not available	flgF- flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family	0.866
DM42_1940	flgG	DM42_1940	DM42_1989	annotation not available	flgF- flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family	0.922
DM42_1940	flgH	DM42_1940	DM42_1990	annotation not available	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.958
DM42_1940	flgI	DM42_1940	DM42_1991	annotation not available	Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.938
DM42_1940	flgJ	DM42_1940	DM42_1992	annotation not available	flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ	0.999
DM42_1940	flgK	DM42_1940	DM42_1994	annotation not available	flgK_ends- flagellar hook-associated protein FlgK	0.989
DM42_1940	fliF	DM42_1940	DM42_1945	annotation not available	Flagellar M-ring protein; The M ring may be actively involved in energy transduction	0.989
DM42_1940	fliG	DM42_1940	DM42_1944	annotation not available	fliG- flagellar motor switch protein FliG	0.987
DM42_1940	fliM	DM42_1940	DM42_1738	annotation not available	fliM_switch- flagellar motor switch protein FliM	0.961
WI67_16110	DM42_1940	DM42_1986	DM42_1940	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	annotation not available	0.950
WI67_16110	WL94_22810	DM42_1986	DM42_1988	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flgF- flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family	0.994
WI67_16110	flgG	DM42_1986	DM42_1989	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flgF- flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family	0.999
WI67_16110	flgH	DM42_1986	DM42_1990	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.997
WI67_16110	flgI	DM42_1986	DM42_1991	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.999
WI67_16110	flgJ	DM42_1986	DM42_1992	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ	0.999
WI67_16110	flgK	DM42_1986	DM42_1994	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flgK_ends- flagellar hook-associated protein FlgK	0.999
WI67_16110	fliF	DM42_1986	DM42_1945	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	Flagellar M-ring protein; The M ring may be actively involved in energy transduction	0.966
WI67_16110	fliG	DM42_1986	DM42_1944	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	fliG- flagellar motor switch protein FliG	0.974
WI67_16110	fliM	DM42_1986	DM42_1738	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	fliM_switch- flagellar motor switch protein FliM	0.975

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