STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cytR_2annotation not available (339 aa)    
Predicted Functional Partners:
DM42_2035
Belongs to the carbohydrate kinase PfkB family
 
  
 0.902
yihS
annotation not available
       0.848
DM42_2034
Conserved hypothetical protein
 
     0.628
DM42_7030
Deor family transcriptional regulator, aga operon transcriptional repressor; deoR C terminal sensor domain protein
  
 
 
 0.625
DM42_5507
Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; AraC family transcriptional regulator; deoR C terminal sensor domain protein
  
 
 
 0.586
DM42_4739
annotation not available
  
 
 
 0.567
deoR
annotation not available
  
 
 
 0.532
DM42_899
Hypothetical protein; DeoR family transcriptional regulator; deoR C terminal sensor domain protein
  
 
 
 0.529
nagE
N-acetylglucosamine pts system eiicba or eiicb component; PTS N-acetyl-D-glucosamine transporter; PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component
 
   
 0.490
Oxidoreductase
annotation not available
 
   
 0.478
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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