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raiA protein (Burkholderia cepacia) - STRING interaction network
"raiA" - Ribosome hibernation promoting factor in Burkholderia cepacia
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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raiARibosome hibernation promoting factor; yfiA- ribosomal subunit interface protein (119 aa)    
Predicted Functional Partners:
WL94_14085
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (501 aa)
   
   
  0.767
WI67_14940
annotation not available (151 aa)
   
        0.759
rplV
50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (109 aa)
   
 
 
  0.653
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (138 aa)
     
 
  0.644
WI67_14950
Nucleotide-binding protein CEQ23_14710; Displays ATPase and GTPase activities (302 aa)
   
   
  0.607
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (156 aa)
       
 
  0.604
rpmH
rpmH_bact- ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (44 aa)
     
 
  0.593
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane (221 aa)
   
   
  0.586
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (206 aa)
   
      0.584
lptB
annotation not available (258 aa)
         
  0.582
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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