STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WI67_14470D,D-heptose 1,7-bisphosphate phosphatase; HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein (187 aa)    
Predicted Functional Partners:
WL94_19890
Domain I; rfaE_dom_I: bifunctional protein RfaE, domain I
 
  
 0.990
WL94_25350
ADP-D-glycero-D-manno-heptose synthase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
 
 
 0.983
WL94_02995
annotation not available
  
 0.962
glyS
glyS: glycine--tRNA ligase, beta subunit
       0.891
rfaF
heptsyl_trn_II: lipopolysaccharide heptosyltransferase II
   
 0.866
glyQ
glyQ: glycine--tRNA ligase, alpha subunit
       0.852
WL94_14920
annotation not available
 
    0.851
DM42_7139
annotation not available
   
 0.845
hisB
annotation not available
    
 0.842
rfaD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose
 
   
 0.832
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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