STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_08845xylB: xylulokinase (493 aa)    
Predicted Functional Partners:
xylA
xylose_isom_A: xylose isomerase; Belongs to the xylose isomerase family
 
 
 0.990
WL94_08850
annotation not available
 
 0.989
DM42_5056
annotation not available
 
 0.936
rpe
Rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family
 
 0.927
WI67_13915
annotation not available
 
  
 0.725
DM42_4324
annotation not available
  
  
 0.685
polS
annotation not available
 
   
 0.670
WL94_18640
D-xylose ABC transporter, D-xylose-binding protein; xylF: D-xylose ABC transporter, D-xylose-binding protein
 
   
 0.526
WL94_18655
annotation not available
 
 
 0.499
DM42_2208
PTS_HPr_: phosphocarrier, HPr family protein
    
 
 0.436
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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