Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_12660

annotation not available (280 aa)

Predicted Functional Partners:

WL94_24615

0.966

WI67_12655

0.653

WL94_24620

0.624

adiA

0.475

WI67_12650

0.465

DM42_3981

0.444

WI67_13145

0.444

WI67_30675

0.400

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3981	WI67_12660	DM42_3981	DM42_2726	orn/Lys/Arg decarboxylase, C-terminal domain protein	annotation not available	0.444
WI67_12650	WI67_12655	DM42_2728	DM42_2727	annotation not available	annotation not available	0.981
WI67_12650	WI67_12660	DM42_2728	DM42_2726	annotation not available	annotation not available	0.465
WI67_12650	WL94_24615	DM42_2728	DM42_2725	annotation not available	annotation not available	0.408
WI67_12655	WI67_12650	DM42_2727	DM42_2728	annotation not available	annotation not available	0.981
WI67_12655	WI67_12660	DM42_2727	DM42_2726	annotation not available	annotation not available	0.653
WI67_12655	WL94_24615	DM42_2727	DM42_2725	annotation not available	annotation not available	0.625
WI67_12660	DM42_3981	DM42_2726	DM42_3981	annotation not available	orn/Lys/Arg decarboxylase, C-terminal domain protein	0.444
WI67_12660	WI67_12650	DM42_2726	DM42_2728	annotation not available	annotation not available	0.465
WI67_12660	WI67_12655	DM42_2726	DM42_2727	annotation not available	annotation not available	0.653
WI67_12660	WI67_13145	DM42_2726	DM42_2637	annotation not available	orn/Lys/Arg decarboxylase, N-terminal domain protein	0.444
WI67_12660	WI67_30675	DM42_2726	DM42_5465	annotation not available	Ribose ABC transporter; Belongs to the RbsD / FucU family	0.400
WI67_12660	WL94_24615	DM42_2726	DM42_2725	annotation not available	annotation not available	0.966
WI67_12660	WL94_24620	DM42_2726	DM42_2724	annotation not available	benE- benzoate transporter family protein	0.624
WI67_12660	adiA	DM42_2726	DM42_3980	annotation not available	annotation not available	0.475
WI67_13145	WI67_12660	DM42_2637	DM42_2726	orn/Lys/Arg decarboxylase, N-terminal domain protein	annotation not available	0.444
WI67_13145	adiA	DM42_2637	DM42_3980	orn/Lys/Arg decarboxylase, N-terminal domain protein	annotation not available	0.820
WI67_30675	WI67_12660	DM42_5465	DM42_2726	Ribose ABC transporter; Belongs to the RbsD / FucU family	annotation not available	0.400
WL94_24615	WI67_12650	DM42_2725	DM42_2728	annotation not available	annotation not available	0.408
WL94_24615	WI67_12655	DM42_2725	DM42_2727	annotation not available	annotation not available	0.625

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Network

Neighborhood

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Fusion

Databases

Cooccurrence

Textmining

Coexpression

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