Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_30080

annotation not available (308 aa)

Predicted Functional Partners:

eda

0.974

edd

0.922

uxuA

0.897

rpe

0.849

rimO

0.847

kduD

0.839

WL94_29825

0.831

mgsA

0.657

DM42_3404

0.615

WL94_30075

0.601

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3404	WL94_30075	DM42_3404	DM42_3407	annotation not available	Uncharacterized protein	0.412
DM42_3404	WL94_30080	DM42_3404	DM42_3406	annotation not available	annotation not available	0.615
DM42_3404	rimO	DM42_3404	DM42_3405	annotation not available	Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily	0.667
WL94_29825	WL94_30080	DM42_3457	DM42_3406	annotation not available	annotation not available	0.831
WL94_29825	eda	DM42_3457	DM42_1181	annotation not available	Eda- 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein	0.950
WL94_29825	edd	DM42_3457	DM42_1182	annotation not available	Edd- phosphogluconate dehydratase; Belongs to the IlvD/Edd family	0.910
WL94_29825	kduD	DM42_3457	DM42_5024	annotation not available	kduD- 2-deoxy-D-gluconate 3-dehydrogenase	0.836
WL94_29825	rpe	DM42_3457	DM42_1307	annotation not available	Rpe- ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family	0.849
WL94_29825	uxuA	DM42_3457	DM42_6284	annotation not available	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate	0.872
WL94_30075	DM42_3404	DM42_3407	DM42_3404	Uncharacterized protein	annotation not available	0.412
WL94_30075	WL94_30080	DM42_3407	DM42_3406	Uncharacterized protein	annotation not available	0.601
WL94_30075	rimO	DM42_3407	DM42_3405	Uncharacterized protein	Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily	0.650
WL94_30080	DM42_3404	DM42_3406	DM42_3404	annotation not available	annotation not available	0.615
WL94_30080	WL94_29825	DM42_3406	DM42_3457	annotation not available	annotation not available	0.831
WL94_30080	WL94_30075	DM42_3406	DM42_3407	annotation not available	Uncharacterized protein	0.601
WL94_30080	eda	DM42_3406	DM42_1181	annotation not available	Eda- 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein	0.974
WL94_30080	edd	DM42_3406	DM42_1182	annotation not available	Edd- phosphogluconate dehydratase; Belongs to the IlvD/Edd family	0.922
WL94_30080	kduD	DM42_3406	DM42_5024	annotation not available	kduD- 2-deoxy-D-gluconate 3-dehydrogenase	0.839
WL94_30080	mgsA	DM42_3406	DM42_2770	annotation not available	MGSA- methylglyoxal synthase	0.657
WL94_30080	rimO	DM42_3406	DM42_3405	annotation not available	Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily	0.847

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Coexpression

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