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STRINGSTRING
DM42_3496 protein (Burkholderia cepacia) - STRING interaction network
"DM42_3496" - Conserved hypothetical protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3496Conserved hypothetical protein (108 aa)    
Predicted Functional Partners:
DM42_6248
Conserved hypothetical protein (160 aa)
   
          0.782
DM42_5267
Conserved hypothetical protein (83 aa)
   
          0.781
DM42_5587
Conserved hypothetical protein (91 aa)
   
          0.777
DM42_3631
Conserved hypothetical protein (100 aa)
   
          0.773
WL94_31165
annotation not available (392 aa)
   
          0.772
DM42_6636
Conserved hypothetical protein (113 aa)
   
          0.771
DM42_2604
Conserved hypothetical protein (251 aa)
   
          0.769
DM42_412
annotation not available (146 aa)
   
          0.761
WL94_17225
Uncharacterized protein (267 aa)
   
          0.760
DM42_4098
annotation not available (702 aa)
   
          0.756
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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