WL94_11395 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_11395

annotation not available (312 aa)

Predicted Functional Partners:

WL94_11400

0.846

WL94_11415

0.470

DM42_6918

0.469

WL94_29245

0.441

WL94_11390

0.419

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_6918	WL94_11395	DM42_6918	DM42_3563	annotation not available	annotation not available	0.469
DM42_6918	WL94_29245	DM42_6918	DM42_14	annotation not available	annotation not available	0.428
WL94_11390	WL94_11395	DM42_3562	DM42_3563	annotation not available	annotation not available	0.419
WL94_11390	WL94_11400	DM42_3562	DM42_3564	annotation not available	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.419
WL94_11390	WL94_11415	DM42_3562	DM42_3565	annotation not available	annotation not available	0.609
WL94_11395	DM42_6918	DM42_3563	DM42_6918	annotation not available	annotation not available	0.469
WL94_11395	WL94_11390	DM42_3563	DM42_3562	annotation not available	annotation not available	0.419
WL94_11395	WL94_11400	DM42_3563	DM42_3564	annotation not available	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.846
WL94_11395	WL94_11415	DM42_3563	DM42_3565	annotation not available	annotation not available	0.470
WL94_11395	WL94_29245	DM42_3563	DM42_14	annotation not available	annotation not available	0.441
WL94_11400	WL94_11390	DM42_3564	DM42_3562	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	annotation not available	0.419
WL94_11400	WL94_11395	DM42_3564	DM42_3563	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	annotation not available	0.846
WL94_11400	WL94_11415	DM42_3564	DM42_3565	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	annotation not available	0.466
WL94_11415	WL94_11390	DM42_3565	DM42_3562	annotation not available	annotation not available	0.609
WL94_11415	WL94_11395	DM42_3565	DM42_3563	annotation not available	annotation not available	0.470
WL94_11415	WL94_11400	DM42_3565	DM42_3564	annotation not available	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.466
WL94_29245	DM42_6918	DM42_14	DM42_6918	annotation not available	annotation not available	0.428
WL94_29245	WL94_11395	DM42_14	DM42_3563	annotation not available	annotation not available	0.441

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2019

Credits

Access

Info

About