STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4211annotation not available (233 aa)    
Predicted Functional Partners:
DM42_4212
Hypothetical protein; Uncharacterized protein
 
 
 
 0.986
DM42_7389
Hypothetical protein; Antitoxin
   
 
 0.522
argT_1
Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family
       0.485
DM42_5141
Hypothetical protein; Plasmid replication region DNA-binding N-term family protein
  
   
 0.482
DM42_131
annotation not available
  
     0.464
DM42_2676
Hypothetical protein; Uncharacterized protein
  
     0.444
DM42_208
Hypothetical protein; Uncharacterized protein
  
     0.441
DM42_2182
Hypothetical protein; Uncharacterized protein
  
     0.420
DM42_1635
annotation not available
  
     0.415
DM42_3147
annotation not available
  
     0.413
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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