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gabT protein (Burkholderia cepacia) - STRING interaction network
"gabT" - GABAtrnsam: 4-aminobutyrate transaminase in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabTGABAtrnsam- 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (427 aa)    
Predicted Functional Partners:
WL94_02375
annotation not available (489 aa)
 
  0.986
DM42_5876
annotation not available (493 aa)
 
  0.967
WL94_18425
annotation not available (490 aa)
 
  0.966
WL94_11330
annotation not available (481 aa)
 
  0.934
WI67_30435
annotation not available (503 aa)
   
  0.930
WL94_33650
annotation not available (479 aa)
 
  0.929
WL94_39135
annotation not available (486 aa)
   
  0.929
DM42_6772
annotation not available (482 aa)
   
  0.929
WL94_32365
annotation not available (479 aa)
 
  0.929
DM42_6497
MMSDH- methylmalonate-semialdehyde dehydrogenase (506 aa)
 
  0.928
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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