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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgDkdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family (304 aa)    
Predicted Functional Partners:
gudD
Glucar-dehydr: glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
 
 0.986
garD
galactar-dH20: galactarate dehydratase
 
 
 0.985
WL94_02950
annotation not available
 
 
 0.982
WL94_08215
annotation not available
 
 
 0.964
WL94_02635
annotation not available
 
 
 0.964
DM42_6642
annotation not available
 
 
 0.963
araD
annotation not available
  
  
  0.927
WI67_16595
annotation not available
  
 
  0.917
WI67_19165
annotation not available
 
  
 0.761
WI67_05690
annotation not available
 
   
 0.651
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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