fptA protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

fptA

annotation not available (726 aa)

Predicted Functional Partners:

DM42_5771

0.967

WL94_38235

0.881

DM42_5770

0.848

pchB

0.813

WL94_38270

0.809

WL94_38265

0.801

DM42_5764

0.713

DM42_5768

0.709

WI67_29030

0.708

DM42_339

0.703

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_339	DM42_5771	DM42_339	DM42_5771	annotation not available	annotation not available	0.596
DM42_339	fptA	DM42_339	DM42_5769	annotation not available	annotation not available	0.703
DM42_5764	DM42_5768	DM42_5764	DM42_5768	AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.941
DM42_5764	DM42_5770	DM42_5764	DM42_5770	AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.510
DM42_5764	DM42_5771	DM42_5764	DM42_5771	AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.763
DM42_5764	WI67_29030	DM42_5764	DM42_5763	AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.805
DM42_5764	WL94_38235	DM42_5764	DM42_5772	AA-adenyl-dom- amino acid adenylation domain protein	MFS transporter; sider_RhtX_FptX- siderophore transporter, RhtX/FptX family protein	0.662
DM42_5764	WL94_38265	DM42_5764	DM42_5766	AA-adenyl-dom- amino acid adenylation domain protein	Oxidoreductase; Thiaz-red- thiazolinyl imide reductase family protein	0.966
DM42_5764	WL94_38270	DM42_5764	DM42_5765	AA-adenyl-dom- amino acid adenylation domain protein	Non-ribosomal peptide synthetase; AA-adenyl-dom- amino acid adenylation domain protein	0.896
DM42_5764	fptA	DM42_5764	DM42_5769	AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.713
DM42_5764	pchB	DM42_5764	DM42_5760	AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.540
DM42_5768	DM42_5764	DM42_5768	DM42_5764	annotation not available	AA-adenyl-dom- amino acid adenylation domain protein	0.941
DM42_5768	DM42_5770	DM42_5768	DM42_5770	annotation not available	annotation not available	0.510
DM42_5768	DM42_5771	DM42_5768	DM42_5771	annotation not available	annotation not available	0.799
DM42_5768	WI67_29030	DM42_5768	DM42_5763	annotation not available	annotation not available	0.783
DM42_5768	WL94_38235	DM42_5768	DM42_5772	annotation not available	MFS transporter; sider_RhtX_FptX- siderophore transporter, RhtX/FptX family protein	0.773
DM42_5768	WL94_38265	DM42_5768	DM42_5766	annotation not available	Oxidoreductase; Thiaz-red- thiazolinyl imide reductase family protein	0.962
DM42_5768	WL94_38270	DM42_5768	DM42_5765	annotation not available	Non-ribosomal peptide synthetase; AA-adenyl-dom- amino acid adenylation domain protein	0.925
DM42_5768	fptA	DM42_5768	DM42_5769	annotation not available	annotation not available	0.709
DM42_5768	pchB	DM42_5768	DM42_5760	annotation not available	annotation not available	0.566

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