STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_60annotation not available (335 aa)    
Predicted Functional Partners:
mbtH
annotation not available
 
   
 0.920
fhuF
Ferric iron reductase protein fhuf; Iron reductase; fe_III_red_FhuF: siderophore-iron reductase FhuF
 
   
 0.905
DM42_56
annotation not available
 
   
 0.900
fhuB
Ferric hydroxamate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
 
   
 0.895
DM42_59
annotation not available
 
   
 0.894
DM42_53
Non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein
  
 0.793
dltA
Non-ribosomal peptide synthetase; D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
  
 0.762
DM42_6713
annotation not available
    0.750
DM42_55
Putative pyoverdin transport system atp-binding/permease protein; Cyc_pep_trnsptr: cyclic peptide transporter family protein
 
   
 0.731
fecI_3
Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily
 
   
 0.677
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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