DM42_6223 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DM42_6223

annotation not available (108 aa)

Predicted Functional Partners:

WL94_21230

0.775

WI67_28590

0.767

WI67_21715

0.752

WI67_30100

0.744

WI67_10370

0.743

WI67_11060

0.741

WI67_31195

0.729

WL94_17225

0.728

WI67_09215

0.725

WI67_31660

0.720

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_6223	WI67_09215	DM42_6223	DM42_3462	annotation not available	Uncharacterized protein	0.725
DM42_6223	WI67_10370	DM42_6223	DM42_3145	annotation not available	Uncharacterized protein	0.743
DM42_6223	WI67_11060	DM42_6223	DM42_3062	annotation not available	Uncharacterized protein	0.741
DM42_6223	WI67_21715	DM42_6223	DM42_4144	annotation not available	Uncharacterized protein	0.752
DM42_6223	WI67_28590	DM42_6223	DM42_5843	annotation not available	annotation not available	0.767
DM42_6223	WI67_30100	DM42_6223	DM42_5570	annotation not available	Transcriptional regulator	0.744
DM42_6223	WI67_31195	DM42_6223	DM42_5350	annotation not available	Uncharacterized protein	0.729
DM42_6223	WI67_31660	DM42_6223	DM42_5275	annotation not available	Uncharacterized protein	0.720
DM42_6223	WL94_17225	DM42_6223	DM42_561	annotation not available	Uncharacterized protein	0.728
DM42_6223	WL94_21230	DM42_6223	DM42_991	annotation not available	annotation not available	0.775
WI67_09215	DM42_6223	DM42_3462	DM42_6223	Uncharacterized protein	annotation not available	0.725
WI67_09215	WI67_10370	DM42_3462	DM42_3145	Uncharacterized protein	Uncharacterized protein	0.784
WI67_09215	WI67_11060	DM42_3462	DM42_3062	Uncharacterized protein	Uncharacterized protein	0.780
WI67_09215	WI67_21715	DM42_3462	DM42_4144	Uncharacterized protein	Uncharacterized protein	0.776
WI67_09215	WI67_28590	DM42_3462	DM42_5843	Uncharacterized protein	annotation not available	0.663
WI67_09215	WI67_30100	DM42_3462	DM42_5570	Uncharacterized protein	Transcriptional regulator	0.779
WI67_09215	WI67_31195	DM42_3462	DM42_5350	Uncharacterized protein	Uncharacterized protein	0.783
WI67_09215	WI67_31660	DM42_3462	DM42_5275	Uncharacterized protein	Uncharacterized protein	0.784
WI67_09215	WL94_17225	DM42_3462	DM42_561	Uncharacterized protein	Uncharacterized protein	0.784
WI67_09215	WL94_21230	DM42_3462	DM42_991	Uncharacterized protein	annotation not available	0.724

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