DM42_6223 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

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[Homology]

Score

DM42_6223

annotation not available (108 aa)

Predicted Functional Partners:

DM42_991

0.775

DM42_5843

0.767

DM42_4144

0.752

DM42_5570

0.744

DM42_3145

0.743

DM42_3062

0.741

DM42_5350

0.729

DM42_561

0.728

DM42_3462

0.725

DM42_5275

0.720

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DM42_3062	DM42_3145	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.771
DM42_3062	DM42_3462	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.780
DM42_3062	DM42_4144	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.740
DM42_3062	DM42_5275	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.779
DM42_3062	DM42_5350	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.782
DM42_3062	DM42_5570	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Transcriptional regulator	0.782
DM42_3062	DM42_561	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.773
DM42_3062	DM42_5843	Hypothetical protein; Uncharacterized protein	annotation not available	0.568
DM42_3062	DM42_6223	Hypothetical protein; Uncharacterized protein	annotation not available	0.741
DM42_3062	DM42_991	Hypothetical protein; Uncharacterized protein	annotation not available	0.773
DM42_3145	DM42_3062	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.771
DM42_3145	DM42_3462	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.784
DM42_3145	DM42_4144	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.753
DM42_3145	DM42_5275	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.784
DM42_3145	DM42_5350	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.783
DM42_3145	DM42_5570	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Transcriptional regulator	0.780
DM42_3145	DM42_561	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.785
DM42_3145	DM42_5843	Hypothetical protein; Uncharacterized protein	annotation not available	0.664
DM42_3145	DM42_6223	Hypothetical protein; Uncharacterized protein	annotation not available	0.743
DM42_3145	DM42_991	Hypothetical protein; Uncharacterized protein	annotation not available	0.672

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