STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOI81032.1General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)    
Predicted Functional Partners:
xcpT_1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.606
AOI81029.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.591
AOI81035.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.577
gspI
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.569
AOI82319.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
 
 0.562
AOI84020.1
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.560
gspH
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.541
AOI81028.1
Type II secretion system protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.534
epsM
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.530
gspN
General secretion pathway protein GspN; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.505
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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