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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOI82053.1Pilus assembly protein PapD; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)    
Predicted Functional Partners:
AOI82052.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.985
AOI82051.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.961
AOI82054.1
Spore coat protein U; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.955
fimA_3
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.712
AOI81004.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
AOI87028.1
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
AOI81005.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.654
AOI84499.1
Usher CupC3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.646
AOI82416.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.616
WI67_20485
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.476
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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