STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbW_2Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)    
Predicted Functional Partners:
AOI82837.1
Asp/Glu racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.937
WI67_22310
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.727
pucL
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.566
AOI86944.1
Dihydropyrimidinase; Catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.526
ygfU_1
Purine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.519
puuE
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.516
ydfH_1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
PbuX
Xanthine permease XanP; High-affinity transporter for xanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.440
alc-2
Allantoicase; Catalyzes the formation of S-ureidoglycolate and urea from allantoate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the allantoicase family.
  
  
 0.439
AOI85964.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.410
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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