STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOI82856.1ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (774 aa)    
Predicted Functional Partners:
AOI82855.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.951
AOI84949.1
cAMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
AOI84720.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
AOI83177.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.636
AOI85748.1
Sulfite transporter TauE/SafE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.628
AOI85025.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.600
AOI82005.1
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.588
AOI84802.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
AOI84128.1
N(5)-hydroxyornithine transformylase PvdF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
AOI84462.1
Toxin HipA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.525
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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