STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOI83931.1LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
AOI84982.1
Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.587
AOI82024.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.563
AOI86853.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.553
AOI84223.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
AOI84983.1
Addiction module protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.541
AOI81567.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
AOI84814.1
Addiction module killer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.530
AOI82025.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.508
AOI86860.1
Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.504
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
    0.474
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.