Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
resA_2Redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
ypmQ_2
Photosynthetic protein synthase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.693
ypmQ_1
Photosynthetic protein synthase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.622
AOI83730.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
AOI81423.1
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.595
AOI82859.1
Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.567
AOI82860.1
Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.567
AOI82861.1
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.567
AOI82863.1
Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.567
AOI81246.1
Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.539
AOI82038.1
Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.536
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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