STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOI84597.1Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)    
Predicted Functional Partners:
AOI84596.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
AOI84598.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.909
AOI84586.1
RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.797
AOI85687.1
RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.792
AOI84595.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AOI87277.1
Copper-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.673
AOI84599.1
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.603
AOI87043.1
Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.589
AOI84594.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
tatC
Twin-arginine protein translocation system subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.546
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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