STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOI85504.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)    
Predicted Functional Partners:
steT_2
APC family amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
YveA
Aspartate:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
AOI85359.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
AOI85505.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.590
AOI86330.1
GABA permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.584
nreC_1
Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.537
AOI84198.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.521
proY
Cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.517
yifK
D-alanine/D-serine/glycine permease; Involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.486
AOI86936.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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