Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
AOI85844.1RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
    0.744
murR_1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.727
AOI85846.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.649
AOI85847.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.583
AOI86549.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
AOI85345.1
Isoaspartyl peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.473
AOI85850.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.469
AOI82609.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.449
AOI85842.1
Toxin HipA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.445
AOI85843.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.445
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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