artI_2 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

artI_2

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)

Predicted Functional Partners:

hisQ_3

0.953

yecS_5

0.948

yecS_3

0.818

AOI85521.1

0.816

yecS_6

0.814

WI67_24660

0.811

AOI84293.1

0.799

AOI84942.1

0.799

hisQ_6

0.798

hisQ_4

0.797

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOI84293.1	WI67_24660	WI67_17180	WI67_24660	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AOI84293.1	artI_2	WI67_17180	WI67_26030	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AOI84293.1	yecS_5	WI67_17180	WI67_26020	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AOI84942.1	WI67_24660	WI67_20880	WI67_24660	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
AOI84942.1	artI_2	WI67_20880	WI67_26030	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AOI84942.1	hisQ_4	WI67_20880	WI67_13010	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AOI84942.1	hisQ_6	WI67_20880	WI67_05745	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AOI84942.1	yecS_5	WI67_20880	WI67_26020	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AOI85521.1	WI67_24660	WI67_24035	WI67_24660	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AOI85521.1	artI_2	WI67_24035	WI67_26030	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
WI67_24660	AOI84293.1	WI67_24660	WI67_17180	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
WI67_24660	AOI84942.1	WI67_24660	WI67_20880	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
WI67_24660	AOI85521.1	WI67_24660	WI67_24035	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
WI67_24660	artI_2	WI67_24660	WI67_26030	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
WI67_24660	hisQ_3	WI67_24660	WI67_26025	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
WI67_24660	hisQ_4	WI67_24660	WI67_13010	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
WI67_24660	hisQ_6	WI67_24660	WI67_05745	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
WI67_24660	yecS_3	WI67_24660	WI67_07710	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
WI67_24660	yecS_5	WI67_24660	WI67_26020	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
WI67_24660	yecS_6	WI67_24660	WI67_16725	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983

page 1 of 4

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About