STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF63322.1HAD-superfamily subfamily IIA hydrolase hypothetical 3. (291 aa)    
Predicted Functional Partners:
ABF65568.1
Metal dependent phosphohydrolase.
 
  
 0.629
ABF63321.1
MaoC-like dehydratase.
  
    0.548
ABF63323.1
DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.
   
   0.502
ABF64642.1
Transcriptional regulator, XRE family.
  
     0.479
cysC
Adenylylsulfate kinase / sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
   0.470
ABF63644.1
2-deoxycytidine 5-triphosphate deaminase.
 
    0.439
ABF62936.1
Hypothetical protein.
  
    0.420
ABF64822.1
Hypothetical protein.
 
     0.406
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.