STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF64506.1Hypothetical protein. (787 aa)    
Predicted Functional Partners:
ABF64505.1
Hypothetical protein.
 
   
 0.952
ABF64507.1
Glycosyl transferase group 2 family protein.
 
    
0.844
ABF64504.1
Hypothetical protein.
 
    
0.821
ABF64541.1
Hypothetical protein.
  
     0.726
ABF63668.1
Hypothetical protein.
  
     0.669
ABF62964.1
Hypothetical protein.
  
     0.653
ABF63320.1
Hypothetical protein.
 
     0.635
ABF64577.1
Hypothetical protein.
  
     0.630
ABF65132.1
Non-ribosomal peptide synthase.
 
 
 0.590
ABF64508.1
Hypothetical protein.
    0.584
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.