STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF64573.1DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (412 aa)    
Predicted Functional Partners:
ABF63298.1
Oxidoreductase-like protein.
  
  
 0.623
ABF65576.1
Nucleotidyl transferase.
  
  
 0.573
ABF65052.1
Chloramphenicol O-acetyltransferase.
  
  
 0.539
ABF63692.1
Mannose-6-phosphate isomerase type II.
  
  
 0.528
ABF65143.1
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.528
ABF65134.1
Non-ribosomal peptide synthetase.
  
 
 0.527
ABF65167.1
Hypothetical protein.
  
     0.492
ABF65132.1
Non-ribosomal peptide synthase.
  
 
 0.441
ABF63409.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.428
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.