STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF65634.1Competence protein F putative. (243 aa)    
Predicted Functional Partners:
ABF62741.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.944
ABF65682.1
Hypothetical protein.
   
    0.893
ABF65070.1
DNA processing protein DprA putative.
 
 
 0.889
ABF63185.1
Mg chelatase-related protein.
 
  
 0.825
ABF63867.1
ComEC/Rec2-related protein.
 
  
 0.777
ABF65636.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
     
 0.764
ABF65637.1
Transcriptional regulator, MarR family.
  
    0.764
ABF65633.1
Hypothetical protein.
  
    0.757
ABF65635.1
Glutaredoxin GrxC; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.749
ABF64832.1
Prephenate dehydrogenase.
   
  
 0.714
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.