STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0050Transcriptional Regulator, IclR family. (257 aa)    
Predicted Functional Partners:
Tbd_2813
Conserved hypothetical protein.
  
    0.887
Tbd_2812
Allophanate hydrolase subunit 2.
  
    0.868
Tbd_0044
Glycolate oxidase (iron-sulfur subunit) protein.
 
     0.659
Tbd_0049
Conserved hypothetical protein.
 
     0.651
Tbd_0048
Conserved hypothetical protein.
 
     0.637
Tbd_0046
FAD linked oxidase.
 
    0.600
Tbd_0047
Glycolate oxidase, subunit GlcD.
 
    0.589
Tbd_2811
Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.535
Tbd_0045
Probable ring-cleaving dioxygenase.
  
  
 0.524
Tbd_0043
Conserved hypothetical protein.
       0.464
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.