Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0100Predicted signal transduction protein. (546 aa)    
Predicted Functional Partners:
Tbd_1700
Serine/Threonine protein kinase.
 
     0.914
Tbd_1929
Conserved hypothetical protein.
  
     0.744
Tbd_0552
Hypothetical protein.
  
     0.743
Tbd_0101
Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
       0.701
Tbd_2502
Conserved hypothetical protein.
  
     0.658
Tbd_2550
Twitching motility protein PilI.
 
     0.591
Tbd_0548
Hypothetical protein containing TPR repeat.
  
     0.570
Tbd_0462
Hypothetical protein.
  
     0.566
Tbd_0542
Hypothetical protein.
  
     0.547
Tbd_1918
Conserved hypothetical protein.
  
     0.546
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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