STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0139Cytochrome b, putative. (218 aa)    
Predicted Functional Partners:
Tbd_1375
Ni-Fe hydrogenase large chain; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.991
Tbd_1378
Ni-Fe hydrogenase, small subunit.
 
 
 0.990
Tbd_2468
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
   
  
 0.938
Tbd_0138
Cytochrome c''.
 
     0.857
Tbd_0137
Diheme cytochrome c.
 
     0.847
Tbd_0135
Periplasmic Sensor Signal Transduction Histidine Kinase.
 
     0.808
Tbd_1380
Peptidase M52, hydrogen uptake protein.
 
  
 0.799
Tbd_0136
Two component Transcriptional regulator, Winged helix family.
       0.767
Tbd_0140
Conserved hypothetical protein.
  
    0.751
Tbd_0142
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.504
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.