Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tbd_0200Conserved hypothetical protein. (186 aa)    
Predicted Functional Partners:
Tbd_0201
Peptidoglycan glycosyltransferase.
       0.793
lapB
Putative N-acetylglucosaminyl transferase; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
  
     0.635
Tbd_2550
Twitching motility protein PilI.
  
     0.632
Tbd_0204
Type IV pilus assembly membrane transmembrane protein.
 
     0.610
Tbd_0205
Type IV pilus assembly protein PilP.
 
     0.607
Tbd_0203
Type IV pilus assembly protein PilN.
 
     0.578
Tbd_0202
Type IV pilus assembly protein PilM.
 
     0.576
Tbd_0206
Type IV pilus assembly protein PilQ.
 
     0.571
Tbd_2087
Possible transmembrane protein.
  
     0.523
Tbd_0052
Glycine cleavage system transcriptional repressor.
  
     0.514
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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