STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0219(S)-2-hydroxy-acid oxidase. (1259 aa)    
Predicted Functional Partners:
Tbd_0186
Probable cytochrome c-type biogenesis protein.
  
     0.656
Tbd_2477
Iron-sulfur cluster-binding protein, GltD family.
 
 
 
 0.652
Tbd_1185
Succinate dehydrogenase; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.637
Tbd_0218
Conserved hypothetical protein.
 
 
   0.630
Tbd_2468
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.620
Tbd_1156
Conserved hypothetical protein.
  
     0.606
Tbd_0185
Putative transmembrane cytochrome C-type biogenesis transmembrane protein.
 
    0.599
Tbd_0325
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.590
Tbd_2563
NAD(P)H-flavin reductase.
 
 
 0.569
Tbd_1780
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
   
    0.563
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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