STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0885Probable putative transmembrane protein. (262 aa)    
Predicted Functional Partners:
Tbd_0886
Putative thioredoxin protein.
       0.773
Tbd_0887
Peptidase S33, proline iminopeptidase 1; Belongs to the peptidase S33 family.
       0.773
Tbd_2502
Conserved hypothetical protein.
  
     0.610
Tbd_1130
Conserved hypothetical protein.
  
     0.545
Tbd_0888
Conserved hypothetical protein.
       0.513
Tbd_0882
Rieske iron-sulfur protein 2Fe-2S subunit.
  
     0.463
Tbd_1980
Conserved hypothetical protein.
  
     0.445
Tbd_0205
Type IV pilus assembly protein PilP.
  
     0.419
Tbd_0889
Conserved hypothetical protein.
       0.402
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.