STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1413ABC transporter ATPase. (233 aa)    
Predicted Functional Partners:
Tbd_1412
Conserved hypothetical protein.
 
 0.998
Tbd_1582
Conserved hypothetical protein.
  
 
 0.993
Tbd_1414
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.967
Tbd_2292
ABC phosphonate transport system ATPase.
 
    
0.895
Tbd_1415
RND efflux system outer membrane lipoprotein NodT.
 
 
 0.866
Tbd_1418
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.843
Tbd_1416
RND efflux system outer membrane lipoprotein NodT.
  
 
 0.822
Tbd_1761
Lipoprotein releasing system, transmembrane protein, LolC/E family.
 
 0.791
Tbd_1417
Hydrophobe/amphiphile efflux-1 HAE1.
  
  
 0.775
Tbd_1360
ABC transporter permease protein.
  
 
 0.752
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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